Biochemical Analysis Techniques -> Flatbed scanner densitometry

Gel electrophoresis is able to separate proteins according to their molecular weight.
The amount of protein can be determined by applying densitometry on the stained gel.
The equipment for doing this is typically expensive. The ability to reduce the cost of
densitometers will make it available and affordable in laboratories around the world. This
in turn will help to advance life science research.

Flatbed scanners have been previously considered but found to be inferior to commercial densitometers.
Our investigations have found that the key to high sensitivity measurements come from the use
of wavelength limited light that matches the peak absorbance of the gel stain. We then modified the flatbed
scanner to perform high sensitivity densitometry [1]. The approach that we have developed
requires a optical density wedge to be scanned together with the stained gel.
Our investigations have revealed that this wedge has to also be calibrated with wavelength
limited light for high accuracy [2].

For wavelength band limited light, we initially used an array of LEDs. This made the
illumination device bulky. We have found that this problem can be overcome by adapting
the backlighting of a LCD monitor. This is done by using the light guide together with
a selected single color fluorescent lamp [3]. As the brightness of fluorescent lamps cannot
be controlled electrically, we used a proximity approach to the lightguide to do so.

In all imaging devices, brightness and the recording gain are important factors that
determine good measurements. The same applies for flatbed scanner densitometry. We have
investigated these factors and developed a methodology to ascertain how brightness and
gain can be controlled to yield optimal measurement accuracy [4]. Our results show that
sensitivity better than commercial densitometers can be achieved with these schemes.
 
1. H.Y. Tan, T.W. Ng, O.W. Liew,
Light spectrum in flatbed scanner densitometry of stained polyacrylamide electrophoresis gels.
BioTechniques 42: 4 (2007) 474-478.
2. H.Y. Tan, T.W. Ng,
Accurate step wedge calibration for densitometry of electrophoresis gels.
Optics Communications. 281: (2008) 3013-3017.
3. H.Y. Tan, T.W. Ng, O.W. Liew,
Adapted LCD backlighting unit for densitometry of stained polyacrylamide electrophoresis gels.
Electrophoresis. 90 (2009) 987-990.
4. H.Y. Tan, T.W. Ng, O.W. Liew,
Accommodating brightness and exposure levels in densitometry of stained polyacrylamide electrophoresis gels.
Applied Optics. Accepted 29 January 2009.
Major Research Thrusts
Biochemical Analysis Techniques
We seek to develop better methods, assays, and procedures that enable analysis of substances found in living organisms and the chemical reactions underlying life processes.
Particle/Cell Manipulation
Our quest to find novel methods to move particles and cells around to accomplish important functions.
Instrumentation Development
The natural outcome of experimentation where we produce more advanced sensors, actuators, processors, and software.